NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1011610

Scaffold Ga0209596_1011610


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1011610 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5756
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007752Metagenome345Y
F033793Metagenome / Metatranscriptome176N
F040618Metagenome161N

Sequences

Protein IDFamilyRBSSequence
Ga0209596_10116101F040618GGAMTVNIKDVSDKSSCIGFVGQGTWFDGKSFIVTQYKANPTCWYFFVYDIFILTEENYFEGVNSFGNEIWHLNPDNGEMCGKTYLYSSMTDRLYVPFGISQPSKDKSPSFLFVIK
Ga0209596_101161011F033793GAGMILGQDPNSTRPIGTEKTLKEAKEYILSRAYNNDYCAIYVADNENPAGELVGRWVIKNKKLTSFEKKSKPIDYKKQIF
Ga0209596_101161014F007752N/ASVKALFIGKTANGQDCIGCAWDANTLYVYAYEGIVDTFLYYMERFNSVGKAMAFTKLKDGMEEGLYFSPYASGRKLQNHNQLYVLRRYEMKSAMTAHIVVHQNVCFDTPENAVKNLISSGDLEAERSYFVDCMAKRFA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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