Scaffold Ga0209596

Basic Information
Taxon OID	3300027754 Open in IMG/M
Scaffold ID	Ga0209596_1011831 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027754 Open in IMG/M

Scaffold ID

Ga0209596_1011831 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5686
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (58.33%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

5686

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (58.33%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015467	Metagenome	254	Y
F023588	Metagenome	209	N
F024783	Metagenome	204	Y
F032578	Metagenome	179	N
F035297	Metagenome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_101183112	F032578	N/A	MIDPIEGRAYDVRNEDIQAINYIKTQIQSLDHERRNEYATMLIDAQSAKRNINLSANKSHRRYEIARGILLLMQDGQFDRDLVKGICSHITKETYQKAGEALGHLNAAQAELFAQICYGITADQVTIQYIPEQNTFRVQEVRQ
Ga0209596_10118313	F024783	N/A	MMDWGIVVAALITAVGGIMTTLMMVMRKENTQDHAKVVDALEMLSGNVTTIGTKLDGHIDWHLKGVSNGKVSSRNQSPRTKRRVKD
Ga0209596_10118316	F023588	GAG	MVLVTWADAHSGVATWTPIDSLDKDEMIVFTCGFLLSTVDGGKPEHITVYQSRTMEDDIDHVLHIPCQMVRKIAICTPDQLR
Ga0209596_10118317	F015467	N/A	MPNGAQNSNLHPRSTKVGLGSFAPDWSLNSPHTFLLGCGLYTHQPAKIGQDMRRITATIVTTLTLIIGIGTAHAVQAPKPTHSPSTTRTEVIPRELQPTIVFRHGDISWLPQLAAEAGWPPRTWKRLGELVLRESGGCPYRRGGDIVNKNCEVTGHDGSNHASDSGLLQINGVNYNPKRNKYAPICTQMKICTQEPLLDALTNLKAGLLLFKVTGSDWSPWIVPEGGW
Ga0209596_10118318	F035297	AGGAGG	MEPLTNKIKAGWIIAFNMIGWMFFLLPMTGEDIPEGQPTPISQQAWITWIIINIVLLIWVHLLISKEHRANKRAVKTFKRVELARQAHPTHK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209596_1011831

Overview

Ecosystem & Geography

Associated Families

Sequences