NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1012806

Scaffold Ga0209596_1012806


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1012806 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5406
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003579Metagenome / Metatranscriptome478Y
F009125Metagenome322Y
F013396Metagenome271N
F074549Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0209596_10128062F009125AGGMTSDNIRATLTAATPAAAMVSLSQINEVAALVGTLLGIAFLLWRWRKQWKAGNAKNLD
Ga0209596_10128063F074549GGGGGMSLTDILFNAASGGVVGSLLHLGTSFFETWRKKKDAEVEIMLLNAKLAAAEKEAAWNAFTASQKDSNATLVMPAATWPWVGSIYVLVDAFRQLTRPGLTWAGFIFLTSVYFSASPEVRATMSPEIQFGSWTLIFWWVGARYNKSK
Ga0209596_10128064F013396N/AVTLRRSLLLAVLALGLVVVLGLALRSERVLLAGLPTRVVVASEAEAWTLAGPSAVVVLGTGSMAPYIPAAPAGADPLRTVSALAVLVSGASYSDIKAGTLCIYVPVWAGRNVMHQAAQIDAGGWIMTGLGNKAYENRERVTAANFVGIVARTYVWGK
Ga0209596_10128066F003579N/AMGSPAAPKVGTQFEVRYIQYTQPTAVADCHLLDAEGVEIMPVGLVPATAEQCAVWVNDEKFAGVLAVNAGFELLP
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