NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1016128

Scaffold Ga0209596_1016128


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1016128 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4651
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001055Metagenome / Metatranscriptome791Y
F001725Metagenome / Metatranscriptome645Y
F012666Metagenome / Metatranscriptome278Y

Sequences

Protein IDFamilyRBSSequence
Ga0209596_10161285F001725AGGMAAINNGTTCLYGVAGTVTNLYVQSYSVSSSFNSEATVVDETGLTKTHRLDDRKSEITVEGICKTSSMPVLGAALSFTLNAATAYPSGSASVSFAGTITKIDEKGSNKGFTAVTVTAIDYEGITPA
Ga0209596_10161286F001055N/AMASKSIRHIVESTVATYLAAQTDLTTITFLTGDSAATQTLPKAVVLCESARAPGDLPEGLGNFSCSVRITLFSNADDTTLADHRLRCAALSGNMRDLTSIKAAFTATGDASCYDVTIGSEDEGVDERSWATSFSFDILTVFPA
Ga0209596_10161288F012666N/AYSVRLPAVTASWSLPDGSTGSSAALLSSGVPIASLAQGKKIVAGGKTVRITTQTYKPGSAWITLVVIDDNQ
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