NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1024364

Scaffold Ga0209596_1024364


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1024364 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3545
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C10FEB(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082694Metagenome113Y
F085382Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0209596_10243643F085382N/AMSIYDTFLPDFQGLLADIGVPATVGGDLFLVGLSRPMNTPKFDSGGFTDQKMWTVRFAAATAPWTASDGRVGGQVATLASGVPIAALGEGKKLTVNGQVLRIKGQSYKKTSAVIELDCIDDNQ
Ga0209596_10243645F082694N/AMGTISARQILEAVIASHLSDQTELTGVSIYTGDGADTNVLPKLIVLCDSARTPSDLPQGLGNYMCGTRVTIFSSADDNTLVEHRARCAAVAGAMQDLTAIKAKFVAGGDAACYDVTPQSEDEGVNERSWASVMSYDILIVVNPQA

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