NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1025132

Scaffold Ga0209596_1025132


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1025132 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3476
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019099Metagenome231Y
F032573Metagenome179Y
F043751Metagenome155Y
F057197Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0209596_10251322F057197GAGGMANFETWQYQNLVQFAKEATERMNLLNAEVEALNADLKAAINAYRDLLRRDTLGFLKASHPAEAEKTGE
Ga0209596_10251324F019099N/AMIINGKIVKDWDKRQISTGYQKPNQFRQITWDMGRIQSWLLGEKRLTRNLIEKVIR
Ga0209596_10251327F043751AGGAMKHCWPKKMYYVMCRWIAIKNGSRNYVRTPSLGRARYYSKKLKLKVRQIDVRVRGQKAYVLKGSWL
Ga0209596_10251328F032573AGGMSKAEAWRKWWSVIHKTAPAGSYDPREAPMWDAWEAAWDESTKQSQVEITHLKEQLLRANTNDGAYKAAFLAGQMAARGGSWK
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