Scaffold Ga0209596_1025896

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209596_1025896

Scaffold Ga0209596_1025896

Overview

Basic Information
Taxon OID	3300027754 Open in IMG/M
Scaffold ID	Ga0209596_1025896 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3406
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)		Depth (m)	8
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025942	Metagenome	199	N
F057986	Metagenome	135	Y
F066574	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_102589610	F025942	AGG	MNESWLARNIQPVTVVFLLFSYFLFAMLSIFELETRGAYVDLLGQAMIIVITAIFAGKTAEKIVDIRTNKGGSNGT
Ga0209596_102589611	F066574	N/A	MRGFVIFLIAAFVYGATIKRECSVSDFVNLMYSTNNPKERADKAWEWLEESGPACNKQQLTLIYANLPTLMGSSDSMKIRARIEQLHERSSK
Ga0209596_10258964	F057986	GGAG	MIEMTKRLLATPSPLEMAARELVQAQRAKLEAESAREYAYHMVRYNDDRINRLRERLDELKGEQA

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