NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1030262

Scaffold Ga0209596_1030262


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1030262 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3074
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011919Metagenome285N
F013410Metagenome271Y
F031092Metagenome183Y

Sequences

Protein IDFamilyRBSSequence
Ga0209596_10302624F031092AGGAMSTMREELNNISTMLDALEKLNRMHDFIGKDEIDSRLRWATKNTADKINHLSNLNG
Ga0209596_10302627F011919AGGMSDLQLFAPTRGLGAYREECAIDRNTVIISPSAKPTSALAALRALPKSGSKRRRVYEYLKQTGGATDEEIERALGISGNTVRPTRGSLVKDKFVYATELERPTLAGNMAIVWKAR
Ga0209596_10302628F013410AGGAGMYPENYSDKYNKVFKKFVDDIMKPPRPIDRLDDHEILLDELTLMYDAHMTIGGEQNRFNASVIRAAINCIKGLSA
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