NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1031003

Scaffold Ga0209596_1031003


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1031003 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3023
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009266Metagenome / Metatranscriptome320Y
F101144Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209596_10310031F009266AGGAMTDKEIKILDKEIQYLCEQQDRVKAIREYTGINPGYNFLQEAETIESLYKSVLEHRKHDKSTYFSCATSGWNIVYLRDKKTYKKDEEFRIKIFHTFVWSDNLE
Ga0209596_10310032F101144N/AMEAKTFTYYMTERHGYVETTRAYLRKLKISKLISPYSKQSRSKVYLEEDGDLRLFIKRHSVAGIEITLKEAEKEQRFFDNMLNFKDEYCEDKQYDGFKSDWTMLQRTYFTKPDSIKHLVNSTFETSDGKCLKIVPAFYLDGKPLNEAQLNKLGIELTKVRTDECEVSYDD
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