NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1043324

Scaffold Ga0209596_1043324


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1043324 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2412
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000962Metagenome / Metatranscriptome820Y
F012669Metagenome / Metatranscriptome278Y
F014847Metagenome / Metatranscriptome259Y
F016528Metagenome / Metatranscriptome246N
F028145Metagenome / Metatranscriptome192N
F089877Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209596_10433241F089877AGGMKIDISSIDRTQFMVHEHSLNGEIVYLIQPQHIGTKWRQDNKHMRSVVVNYAGEVISASFPKFFNWSEQPDLSPVPNSLNHCTVVEKLD
Ga0209596_10433242F012669N/AMSEQTYMKLKDAVKRPVFDAKTINRENPRFKSLVDSYQKWNQDDYFTEHRSTYENDIIECLERHNLDGFALAQHLSEYKYIEPDSELVHILEDVTFVKSSLEIEIEIQWVKENFLTISDDVIGKKVNVKQGYKKYENHYITTIRPDTYEVTISYDINKKGGYIVGFENVTFL
Ga0209596_10433243F000962GGALLRICVYHNDFTIGFPKSDMNIHVSDEIKAKYPHMEFRGKQRQLNDRTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKKVS
Ga0209596_10433244F028145N/AMKLFCIFIVNLALSLFASILLYKLFKVDVSPTIISIGLIVAYMCLPQRFHDWISEK
Ga0209596_10433245F014847AGGMEFESNADILRDLMNQIHTLHKENAKLIQEVEQLKEINSELNRKLKSIQALFL
Ga0209596_10433246F016528N/AMINNNELFAKVLAENPLPYRLGDKVNTNHGIGYISGYNFKDREKVWKFTIRPHGLENYYTDVETVYGKVD
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