NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1044837

Scaffold Ga0209596_1044837


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1044837 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2357
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001706Metagenome / Metatranscriptome648Y
F003862Metagenome / Metatranscriptome464Y
F005780Metagenome / Metatranscriptome390Y
F032951Metagenome / Metatranscriptome178N

Sequences

Protein IDFamilyRBSSequence
Ga0209596_104483711F005780AGGAMSGGTMQETVSIAWCDNGMVDGKFMQGVADVMLKSGITFNTTLRSHGNQIARQRQVVINHWYEKSKSDWLLWVDSDVVISPEAFRLLWDNKDAKKRPLISGVYFTTDTPEQPLMIPMP
Ga0209596_10448372F003862AGGAGMATYTFLTPTLQQGLIGNHRLFQFFAQRTKSYTVINDAGVYSLTQYPAQDDLETYTAYYMGGLIHTGITDAIRTAMIAAGIGITADNFTTE
Ga0209596_10448373F001706AGTAGGMKHWEHHPEPIEGCFGCKGLGLQMNSGDAARDIPDKKWNSELQAYRDARAQGIQPAGTRMKDIISAHEASETLGKAYNSETMPKAKDINKKSVEVLKEIGQI
Ga0209596_10448379F032951AGGAMSSGQFVRHDRFNKIIMRDGLILTLRKDGTVKVQRDPKTGDIIKGSK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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