NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1045167

Scaffold Ga0209596_1045167


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1045167 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2346
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046202Metagenome151Y
F048114Metagenome148Y
F071957Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0209596_10451672F046202AGGAGGMFESFGDFFWKFMAMSGFMFWICFLVFIGLVIRRNRAKRRMFYEH
Ga0209596_10451676F071957AGGAGMTKQDAELSPLARQLLGNSGAMKLFTQTEFDAALTEAKAEIMAIAIQTTKQALEIERNACADIALAWSQEELFEAIRNRMKVKDD
Ga0209596_10451677F048114GGAGGLNYGKEGEGEDEHRHRCLVRGIINMRIQDRDSAYRWLNGYVDHLGKRHKGWNELHPKSRLEADVRDQWTKGNRGNTGEWK
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