NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1058600

Scaffold Ga0209596_1058600


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1058600 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1971
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004231Metagenome447Y
F015570Metagenome253Y
F024504Metagenome205N
F029673Metagenome187N
F079808Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0209596_10586003F004231AGGAGMSVKPKDFQHEICVYLEGIGECLVCFDILSPGDELDADHSDTYEIDFSVFDEDDKHITYDISKKQYNHCENKAMDEMRDITTQWHKEWETCFD
Ga0209596_10586004F029673GGAGLTKAEMVQHLRMAACNENTITGMSNAFDLGAEHERDVVSSIIFNMVKEQHLAQNIVDTIRVRE
Ga0209596_10586005F015570AGGMNDKLDEAFDLLEFDVTDQIRNMEYLAEQKKISTGVTDGSIQRALVRDLTENLRTLPVSNDPLLLRNDVLEEVAVELAKLPFGDTAASYAAFVRAMKS
Ga0209596_10586006F024504AGGAGMDRKTVGITAPYRKSDYTYQDMLLDRIKDLEALVAKLEQRIKVLEAK
Ga0209596_10586007F079808GGAGGMKELLETIYEDESNVYYCCYCLQPQGEKIGCCHENHFVEFKYLDNDCKQDIAQEILNG
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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