NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209444_10042719

Scaffold Ga0209444_10042719


Overview

Basic Information
Taxon OID3300027756 Open in IMG/M
Scaffold IDGa0209444_10042719 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2095
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039124Metagenome / Metatranscriptome164N
F041754Metagenome159N

Sequences

Protein IDFamilyRBSSequence
Ga0209444_100427192F039124N/ALTDGFLCGIVCIVEMKTVSIIKDGAFMKSHIDYPVTNAQWVRMDNIVLWDYLKTLHLIDVDNSLVMFQGTLDIFYLRHRHNNDSVTKIDYNSDPWGRKFMINPSMYYCYVSCKIKIEVNIIVTTVNNMRVYCVDVLKDV
Ga0209444_100427193F041754GGAMNHMKLNAILEKYPKINEDWLLHTYNFGNSTSLGKRIGWVYNELMMNGRIDVIHNDILSSINELDSVTEYFIRNVITRDNFVGDDVYDRLKPYNADPWNREFLVYYGNVIHPEYYSVKNRDGWDKVFISVYFNNMVAKYSGMHITNESKVPLMILYSTSVNGLNIYCLDVVKH
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