Basic Information | |
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Taxon OID | 3300027758 Open in IMG/M |
Scaffold ID | Ga0209379_10049948 Open in IMG/M |
Source Dataset Name | Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd00.1 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1597 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Atlantic Coast Under Amendment With Organic Carbon And Nitrate |
Source Dataset Sampling Location | ||||||||
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Location Name | Atlantic Coast | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F019836 | Metagenome / Metatranscriptome | 227 | Y |
F037230 | Metagenome / Metatranscriptome | 168 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209379_100499481 | F019836 | N/A | MQKESLELPVKQFHRLYDLLGDLIDYEAEINVFNMENNDIDFLEDIRTELFNQIPDEKTYTDYAVTGRSSNPSIQAGKLYKIVEQTSKYGFKLEVEDGEVIYCLLKNCAFLDGRDWTIINVED |
Ga0209379_100499483 | F037230 | N/A | MKDLTEEYVNIDWSGICEDFDLDSGDISPEQSLELDRALGNINEVLHNFIDQNKSGVHLGQATLTNTEHNVLMVALDHMYEHLDDLVGDLETFEEENTNLKRKDAVKSLKEMFNL |
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