Scaffold Ga0209296

Basic Information
Taxon OID	3300027759 Open in IMG/M
Scaffold ID	Ga0209296_1000046 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027759 Open in IMG/M

Scaffold ID

Ga0209296_1000046 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	109757
Total Scaffold Genes	166 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	123 (74.10%)
Novel Protein Genes	13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	11 (84.62%)
Associated Families	13

Scaffold Components

Scaffold Length (bps)

109757

Total Scaffold Genes

166 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

123 (74.10%)

Novel Protein Genes

13 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

11 (84.62%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae

(Source: IMG-VR)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F004092	Metagenome / Metatranscriptome	453	Y
F004132	Metagenome / Metatranscriptome	451	Y
F004405	Metagenome / Metatranscriptome	439	Y
F004475	Metagenome / Metatranscriptome	436	Y
F007112	Metagenome	357	Y
F011077	Metagenome / Metatranscriptome	295	Y
F012455	Metagenome / Metatranscriptome	280	Y
F018928	Metagenome / Metatranscriptome	232	Y
F034566	Metagenome	174	Y
F038549	Metagenome / Metatranscriptome	165	N
F041188	Metagenome / Metatranscriptome	160	N
F047494	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100004610	F004405	AGGAG	MEDCTTTDFLYPMKADLYYPVINQTQYGQASRTWFYDRTIICNATSIGGAGTEQIKPEAFLQHENKLIARVKADPRMSSTETENAINNILITNIRNANDQLIYRETGGSRSGRGTIYEVATVDPFTGPFGSIEYFKILLRRTENQTITD
Ga0209296_1000046105	F007112	GGA	VHTLHYIAVEADSKQEAFDKVVVSLQSNEDGYRLADWSDWHVVGGGRWSTNANKKSENNLMGGYNDDPTDVIGYAENKEKFQEVVKDILRFRSQTMNRNIVEIKTDKFISQMVDYASEGGRGPWNGDTLMNVYSIKQAAEMLMGSWTSDSGFYDLQEHVSEFEYLDERLDKPDRAVRQYLVPVDFHF
Ga0209296_1000046112	F004132	AGGA	MSEVMTQEQLSVPYNPNLLVTYKAIPDTYAAPESPTFMTDKVTDLEWELHQGRTNANLAAERRLDISWLEDQIPEWYDPNYSKEEVLKALTQHFNLNPVKQMSVYGTVTFSGTINIPLDEIEDFDLSSVTIDAELSSYDYDADLTVDDVSLEEN
Ga0209296_100004612	F038549	N/A	MVSIVSAETGFPPLFVNAFVNSELKEFELMPTGPEPFQPFFPAQVPDSVEGIYNDIPFIRNNPDTTVIIFDRLMRFRPTPFYKHKREQLIYFIYSPNLSKLFDTTRVIIECLDREDVAAQALNSWIAENDIEDENGNVIPKNVFFHNLKVYQADESRDIIELASARTLGLNKLVIEYDYHTVSVEGSNQRYS
Ga0209296_1000046120	F000808	GGA	MEYTYSLTTSYDGELIHTLRVSDMLEAVRAWDKCVDYGFAKEYATYNLSDPTGKMYTKTFYTNGEVVIK
Ga0209296_1000046128	F012455	N/A	MLKEIKNKIIRIQELRRSNAATPIPNKKKYSRKVKHKNAK
Ga0209296_1000046131	F047494	AGGA	MNSLLNKVCKHTANLLATSIVNDMKYSFCENCEQNIYSHYIEDSELLSYWSSWKVGK
Ga0209296_100004631	F004092	AGGA	MSNNFTIYPGKFPCKTCQEEVNSLRYWRETGDATWMCSKKHISKVGLIPPKRKKKDFANE
Ga0209296_100004668	F018928	AGGGGG	MFIRSLNTMEKIISKNNNLLWNGWDVIDLKESDIAKTSPMGIRVKDKWYIHKVYSPGRNGWDIPNKYRE
Ga0209296_10000468	F041188	AGGAG	MNLTIEELSTKTVMALKAYAKKNKIELFEANTKLEILEILASWIPPEKTEEQVQEADKAKSMINKIALYSERNLHMDNLGALKVGYNIVSKEASEKWLTHRLVRVAPPEEVAAYYGK
Ga0209296_100004683	F004475	AGAAG	MSNWTEELSDEHKEQIWHFIVETVKEIREQIAQDIQGTSDLWKAKGLNKSRRTTKAFEISAAIARGQNEI
Ga0209296_100004692	F034566	AGG	MSFKLKSIIWVQSALIVILSVFMLFMGGDLKQSRKMTLDQSNYCIRYTSDIIASSRLDLIREQDAHSRTVDKANSVIDDIVNRYNSLVARYNKSTGGTNYDPLNTYSYRIRP
Ga0209296_100004694	F011077	GGAGG	MHELMDTNLTWAEEDVNLWKGWTYSIEKNRYYFNDIGDESLASFWADDFLNQAYL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209296_1000046

Overview

Ecosystem & Geography

Associated Families

Sequences