NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209296_1000188

Scaffold Ga0209296_1000188


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1000188 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)55025
Total Scaffold Genes84 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)76 (90.48%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000220Metagenome / Metatranscriptome1544Y
F000952Metagenome / Metatranscriptome822Y
F005903Metagenome / Metatranscriptome386Y
F011374Metagenome / Metatranscriptome291Y
F024264Metagenome / Metatranscriptome206Y
F058000Metagenome135Y
F072099Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100018817F024264GGAGMSTLTNVFAVHEDATGTMYAGATNLAGYQLASGGVAGEIVFRDGGSGGTERLRLNITTNTAVIYTLIPGNGIRFNTDIHVTLPASAAVTIFCG
Ga0209296_100018826F000952AGGAGMSTSDYEQRTILVPQHKRIAMGEKLDGTAMQPKGGSKSSKKPVGGLAHAKKK
Ga0209296_100018838F072099GGAGMQAFSYKRRAPINTMMVLIDFPLVEVGGKRIDHLREDFYDNAVHLRNRRNSTPIVSPYDIALSGGEPYSVWR
Ga0209296_10001884F000220N/AMPEEKLNPNDTLSKVLAYVDSPFKLIAILVMGVVAFAGYFVYSNQEFLIGAYKENRKLPSINEERVEDAAGMLFKQTPATVVAVFKVNPLFGSRVLHRAYTREGRDKSVEGIDVGLFTSNAANNHDVIKLMANETPCGEYLKPQSEVGLWYTAQGVAFTCRTSVPPELSRFVGQITVGFKSEPEDLSGTVSMMEIAATMLTKRSP
Ga0209296_100018847F058000AGGAGMTEVQATIQALATVESLTNNIDTLAVLDRQIKTLTAQTKILKDGIANTLGEGKHRGEKYGVRVTIENRIGSVDVEAVIKALGLTEEEFDKQFRGESSAVIKVTTTA
Ga0209296_10001885F011374GAGGVAVYQDLKKTGNDLTKITSEVGEALSSFFKGQAELETSHEKAEVQREDNRKKGIKDDLATQAIDNVMYLRQTKQFYADLERMVRWEMGMPDLWREIVEEYQRLLDQKSEQAARELHEKRVKAWRRQRLKNQILDKVLETVLVAFVVAYLVCLMWLISLHRRDRLDTYLS
Ga0209296_100018880F005903GGAMITYDPRGMTWEQYCKLMEELFAPQQIGNVPEDLWRNWVDGINGIGFFTQSAIPDHRTYTDWQDWAMAMCGIMVLEG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.