Scaffold Ga0209296_1000292

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209296_1000292

Scaffold Ga0209296_1000292

Overview

Basic Information
Taxon OID	3300027759 Open in IMG/M
Scaffold ID	Ga0209296_1000292 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	42901
Total Scaffold Genes	81 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	75 (92.59%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000324	Metagenome / Metatranscriptome	1299	Y
F004231	Metagenome	447	Y
F016373	Metagenome	247	Y
F065525	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100029227	F000324	AGG	MTIKTVIAPTHQVTYDGATVNVYHANKGEGLSKHQHTYAHLTICHAGSCIIRKEGIEKVIDKYTQPINLKAAEWHEIEALEDGTVFVNVFAEGKY
Ga0209296_100029256	F016373	AGG	MDHKTHLSYSIDRKWILMHDGSPLCDYKKTYDEVMLVVKHYKITLPDCTWNGDRGDWVITSTIQ
Ga0209296_100029263	F065525	AGG	MYLKTYHKQMLRRLEHKPSPLKGFTHGDNNAGNVSVHFENYLNDLQNFGYVVNVEDVWHITGFGLAALHEKKNVATPTKMSNGTTTEFYDGKELKQTCARLGAYDFLKYPSKFGENLRYPRIYL
Ga0209296_100029264	F004231	AGGAG	MTVKPKDFQHEICVYLEGVGECLVCFDILTPGDELDPDHSDDYEIDFAVFDENDKPITYDISKRHYNRCENKATDEMLDITTAWHKEWEDSV

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