Scaffold Ga0209296

Basic Information
Taxon OID	3300027759 Open in IMG/M
Scaffold ID	Ga0209296_1000327 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027759 Open in IMG/M

Scaffold ID

Ga0209296_1000327 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	40377
Total Scaffold Genes	67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	46 (68.66%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

40377

Total Scaffold Genes

67 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

46 (68.66%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F005087	Metagenome / Metatranscriptome	412	Y
F012214	Metagenome	282	Y
F012670	Metagenome / Metatranscriptome	278	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_10003274	F012670	AGGA	MFDQPIRPEGSVVSSPEKLQDARDRKALIKAEKKALQLATGQREPKGNLIDHPEHRHTAGRPKSIVNRVTEYGALFNKLNDEHVAKGFAPLKTAMEVLIEAMQSDELDIKEKSKIAEKLATFESSRAPIISIEHVQNITKEEDVSAEDALDDFMQSLRKI
Ga0209296_10003275	F001915	AGGA	MEWTLAHPLYDIDDIVELGQILLKAEGNTVLNTDPQVFRHQLTVCATNQLFDKRREFLAVCRDADNKLMGYCWFDRGGYTTYSTEEISNAKFHHVGLTLSPRTRVRLINEMIDQHILWASNNSIPIICSTSIRSEHDGFMRIHTKRGFVVNGSYGWIRTEEGLKGIKYV
Ga0209296_100032753	F012214	AGGA	MTDYTRLRTPFINMSFCPDVPSNALGPNEYNSGLNVEADVRGIKKISGEQEILSVIPNLPIFMDGGFRSETEWVFIVATRTTASHGNWYLVTATSITNITPGIGANPAAYLPGYTEDLNITTSWVGNVFFINDGISSPMYFIPTRNEISLYDTAPDNYVWNYDIGVTATRAGFVRNFCSPNVGNILIAGNITKDYVSGTTVNYPTTVRWSQAFANTGVPATWMPTLSNVANEQEIPVRGPIVDGFFLGGNFYVCSYWDTVIFSPIAYQSSTTPVFGVRLLNQGRGLINNNCWSNTDANVYGIDSRDIWIFDGSNFNPLGNQKVRDYFFNNLSVAHSDRIFMVNNTQKNQIEIYYPDLTSTGWCNKMLSWRYDLQVWNAPKDVDLACDACEAPKLVNGVFKYASRTVTYARGGVSNQKLVQTGIGNSFINNQPIPTLFERTNMVLQTEKGPVPYSSKVYIHRVLPEIAGTGVVTITVGSSNSTAQTPTYGQIGIVNVVTDNPWVTTQQNSGRTNSVKVESNNSTDAWNLTALNWQASIVEDAF
Ga0209296_100032758	F005087	AGG	MAALFIQSANSLVSRVAQWVGAIPSPLSITATVIAGGTVVTITTSADPRTLVMPGDFIGVSTMLPYTAVLAVNATNVVVSDPDGIWANLTLPCTILKMPSQSSMEILASIQLAEMQMRKLELPALRSDPFSVTDPTFLTTDSQGMADIPVDMNWPILFFQDSQPSNQPAGATAMGPWIVYDRVGDREIIRRRMIDQLYIRPFGVPRVIRASFSEVGNRYVFTPNPGVNVTIKAYYQKAFPFLFSATGDALNPVGQSNGVLASFPEGYMYGTLQAYYDKNKNTEESQKWKSRFDDAYGLIGDQVQKDKWAGGDQHLTSEYQPRSYRYSFK
Ga0209296_100032762	F003521	AGGA	MKSLVFNIREYFNKRTKIKDTWKEADATRRTLVIENGEKASRLMSSEDFGLMFNLYRFNILERLEESKDDPDRITNAHYVAGVRDFIDFVEKQEFLGKVAKKANT
Ga0209296_100032763	F004695	AGGA	MLDKQNVIVDYIEAPQGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGRVNFEFERFSEADTEQSNQATEMVKYMLNSKNDSYQIIRDWAQDSLLHKNGIVMVSPVREPVTQYKEVEGTKDQLRVFETLAGEKGLTAKRQEMRKIDVDLQGVMQESPDMNDAETIQASLSANTIYRAKYKLTGYSTTVKVKHVAQHYFVCNPTISNIQDQDFVGFYDPMTIHECKAAFPYVDLEKLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVVASAGADRYSRVIMLTTAWIRKDVDGDGEEEIVEVCYSGSYVLYVKEVDFIPLASMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMSFAMQSSTPRIGVNPEFIDAEEIQRGVSAMFILDRKFDANKHVFQFQPMQGNLAYVESSMQRFEADKMAMIGMTSPGDVMNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYIVWKTLVQYSDDYNIQQLANVCAKGKPFMDAKSIENFEFIDRRMINIDLALGFLSDENRLTRQQLITQAQGSFSAAMMQLDPSVPELFVKLRRPFEDTLRVLGVKDVDSYLPTIEEATKIAQSKSQQPPGAAEQELASKVALNTAKVKDTEANTAFTQRKTQDMDTDDMFEAMAAKKGKLSAVEID
Ga0209296_100032766	F001059	AGG	MASYDIEALKADLPTAKDLSQFVYDKTGISLDLIGKPKEEQYLVARNALEGKKIPSDFITDLNPYVDKREMIPVDEMKKVPERSKDLPDTSNRVHFFGATNMPHPHDPQSDRKVQINFHKYDNGAMTYQIMGPIEQIAVGERINKFGTKTPEKYSWIDPRTEEILLRRPDGTFTEKGRGVYAYCIGEKGGGIWSLIDRNILATVEKNITNPWA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209296_1000327

Overview

Ecosystem & Geography

Associated Families

Sequences