NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1000383

Scaffold Ga0209296_1000383


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1000383 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38137
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)52 (82.54%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000324Metagenome / Metatranscriptome1299Y
F019820Metagenome / Metatranscriptome227Y
F079806Metagenome115Y
F095364Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100038325F000324N/AMPAHQIIYNGATVNVYHADKGQGLPRHEHSYAHLTMCHAGSCLITKEGKSLTMTKDTQPVNLVADGWHEIEALEDGTVFVNVFSEGKY
Ga0209296_10003836F095364N/AMLNIGENSFTLLHSDDLDLLEVYLVLSAALDYIEDEAEAISRREGSYLQ
Ga0209296_100038360F079806AGGVTEKGIYMSGTATLTYDLSKPEQVMAHKYALKGLEACQMLESLKAATQGYQAYKGLSETVLADIIKDLSKWEDVKL
Ga0209296_10003837F019820AGGAMSDLKAVKIQGELFWSKWMAEFNTAFNTDNDRYECTIGNISDDDAAKLTGLGIKVKHKDAMGNFIVAKSKYLFKPTDDKLQEVPIEALGNGSKCVAIVGSYTHRMSAKHGNAPSLKTIMVTEVKTYVPETTTADDDAL
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