NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1000527

Scaffold Ga0209296_1000527


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1000527 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33525
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (58.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009529Metagenome / Metatranscriptome316Y
F025466Metagenome / Metatranscriptome201Y
F054668Metagenome / Metatranscriptome139Y
F096878Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0209296_10005271F054668N/ATALVDATQEAEMVYLHSSSGTCFLGNSDVTTSTGYRMDNGDKLTVENKANGIWAITSSGTVTMQVMAIGK
Ga0209296_100052720F096878N/AMNRDPLFSVHNSINGDFVIYLEERDANLDVVEDILGAIPLVQLKGIQSLILHDLKSIDLARLMDKARSAVPDLSIKLASISESEALTLAEQLITAVKFARAMRSQPLTTKLELVK
Ga0209296_100052734F009529AGGAGMNCNICQRATKKEGACVVCELKVKACLVELPALQHESSEHLAPARTGSGAVSSERSIGINVNALDFSMATDLLHILHGWEVPIRIGRGLTPPAYLDKQPTIEAEVEATCSFHLAHLDYSLFQPWAVEFASDVYGLHAKGRAAAKKFSEQARRIPCPTDDCKRFVVIDVENLSDEVSCFGCKQSWTVARLVKLAMSNPNRKFFLDVEAISLWLKISQREIYRIVKRHDIEKRGSLYNFGDILKVVQI
Ga0209296_10005275F025466AGGAMMFDKVKLEAIAKTYLRAAAAAVVALYLADPNQPIKNYLVAGLAAVAGPLLKALDSKSTDFGRGSK
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