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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027759 Open in IMG/M |
| Scaffold ID | Ga0209296_1000563 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 32343 |
| Total Scaffold Genes | 67 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 56 (83.58%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 10 (100.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014135 | Metagenome / Metatranscriptome | 265 | Y |
| F015732 | Metagenome / Metatranscriptome | 252 | N |
| F018930 | Metagenome | 232 | Y |
| F020690 | Metagenome / Metatranscriptome | 222 | N |
| F022415 | Metagenome / Metatranscriptome | 214 | Y |
| F046380 | Metagenome / Metatranscriptome | 151 | N |
| F050153 | Metagenome / Metatranscriptome | 145 | Y |
| F052598 | Metagenome | 142 | N |
| F054041 | Metagenome / Metatranscriptome | 140 | Y |
| F059007 | Metagenome | 134 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209296_100056311 | F018930 | GAGG | MTWYANSEGRYGAKGAKGDRGEAIVEEYCNDNDIFFEDKNDINSQVKLKIDCIIDGVSVDVKSNYYQGFLCVELYTVKNGAGWLYTTTADQIYGVDVDTKSIFRYNVQDMVSYVSENKARAKKTKFGDIVMWVPVKSKIIEKLQ |
| Ga0209296_100056335 | F050153 | AGGA | MSDGGKGSKSRPLGVEYDKYSSNWDTIFRKSPKEIDDAVIEDEAFNLVKERNKNVISDQKPD |
| Ga0209296_100056343 | F052598 | GAG | MIPLFKLTVTDEFHSDFIYETNDKEEVLDRVAIWLAQLDSTPIYSLNIEVNP |
| Ga0209296_100056344 | F054041 | GAGG | MTTIFTCGHKANDDENGWTISTRAYTRENNRAVDYRTVCNNCYYVYDSEDLILYNDDAVEKWLKGE |
| Ga0209296_100056348 | F014135 | AGG | MGKGLEIDFDTADRFTLLNLIDQRKYLKKALKEHKKGKYLHPEDVVRNAEIIAALELLIPYYGGTND |
| Ga0209296_100056354 | F022415 | AGGAG | MSRMSQLHMIITDAIACDLSENLIIDLMVEEGLPREACPEILRVFKQVESVNE |
| Ga0209296_100056355 | F046380 | GGAG | MSNWKSLDQSYETMSQAEALEIVQLEAIALGLPMLETLMFMQDNYEELDSVQKNAFRTAFRGFQRLLAPA |
| Ga0209296_100056356 | F015732 | AGGA | MTKVTNLETAVSIVRNTPDKALALSEIMNILGVSRSNAFVYHTKASKILFSADKVDGVMAKVSPKYKKVSESIQGTSSTKKAQKLAEIDAFLASNAASSKGNPFAALGA |
| Ga0209296_100056363 | F020690 | AGGAG | MIKDTDKMVTKGVYMSLSAIYTHTKTAKVIALMIQRSLPEFRKQLNLPRDVKFRIAPIKAKNTNGYYEVENNMATIECRLGWAKALEVIAHELVHAEQYHTGKLKKKYVQRKGWLHSWNGTPGKKGTTYKAYRDQPWEQEAWNRQMYLAETVCRILEEKYP |
| Ga0209296_10005637 | F059007 | AGG | MPVKVYYYTKDKDGYVTPDATYESTPEDEDGLFLWQHINKARKQAGVPRERFFIINTSCSPRKKPTWINPDWPVVPFPKLKKAKLAFGRYVIEKPPEPVDPDYD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |