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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027759 Open in IMG/M |
| Scaffold ID | Ga0209296_1000634 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 29994 |
| Total Scaffold Genes | 30 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (83.33%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000258 | Metagenome / Metatranscriptome | 1443 | Y |
| F002501 | Metagenome / Metatranscriptome | 553 | Y |
| F004006 | Metagenome / Metatranscriptome | 457 | Y |
| F018177 | Metagenome / Metatranscriptome | 236 | Y |
| F035307 | Metagenome | 172 | Y |
| F056615 | Metagenome / Metatranscriptome | 137 | Y |
| F058150 | Metagenome / Metatranscriptome | 135 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209296_100063418 | F002501 | AGG | MWCGKCGGRVFVDRVFSQKLHMELFCIMCGKRWMCNKETSSFGKWLDKKEAANSKNYGIS |
| Ga0209296_10006342 | F058150 | N/A | MEILVGSNSPVTHKVFWQGQLTDSDSLPVVKLYDITEDPAISPPVNPGTILATLTAIKSEVDAGTYIVYIPVSYTNRQRQLRLNWSYSVSGTSTQKDHKIYVQTPYTDMSQAIDALGLGSDYSDPNSKSYFELCNAERYARKLIEAYTQQQFYLYDDVQIAYGSGSDVLPLPYKLAELHELYMNDILLLNNLTNVNNWNYNTIISESGFGIRINRATMLDNTVYTANGMVPPPGNDTYNGVFKQGITYRVQGRFGWEEVPDEVDLACIELMKDYFSKDKTWRNKYIKSIQTFDWQFEYNSGTYSGTGNLYADQLLLPYVINKMVVI |
| Ga0209296_100063426 | F004006 | AGGA | MTDDIEGLVTSISMNQVLVAILEEHGKIVVPTLRFLDANVSNKELVIDYDEDGPSFTFSLRDIDAIGSDSN |
| Ga0209296_100063429 | F018177 | AGGAG | MPNIDEFLNKPEKIFKNELEKMVGVKPCSKCEKDSQEYFWDVFTTTISWECPDGHKNSFTVQ |
| Ga0209296_10006343 | F056615 | N/A | MYDLVDSLLSMFMDIYKQFDLQDPDTGAIKKEWQFDRTIPCSAKGIISNSASSRSGDKQIISNKYVNDQILQIRTSDKITLREKITNIRDSEGTVIWEELNFPTNTPTVFELMGITPMTDPLGGVVGYNSTVKRSENQTIGQ |
| Ga0209296_10006344 | F035307 | GGA | LDNSSLLVTAASGLQKTMSGTPGIIFKDSTVAQISAAIYYQADVISKITTNKQFQARFQSVIFKQLQQDFGLYIDAQARINPKTLHHVYEWNKAGNPGSRLFKLNITERNGLSFKIGSTFLISKSSVPNSFGSKKYVFKNKASVMEAGMPVVIRPRASKRLVFETSTGVVYMPIGASVTVTRPGGGKATGRFQIAYARFFTGNLVNLSIKRSGFQQIFNSSLNKAMKLPAGIRKVKYSFSANTLNMQAESAIASAFGGTL |
| Ga0209296_10006345 | F000258 | GGAGG | MTVDYKADIMLDLRKYLWSQLKSNNIFAATDYYSDNIGQEIVPIIPVQQSPEMNQFLSGKKHIVYDKIGLSYEDNWAICCEQILFTIYSTDVSEINEIRNLMTDLFRRMDDSARDANAYSGISRKFKFFSIFVADISPTAPSEELAGFLSADVILEVKYARHLDQSGRFA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |