NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1000681

Scaffold Ga0209296_1000681


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1000681 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28851
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (75.56%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001097Metagenome / Metatranscriptome780Y
F001739Metagenome643Y
F001799Metagenome / Metatranscriptome632Y
F007203Metagenome / Metatranscriptome356Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100068118F007203GGAMYVQMQGINLAPKVKELEKRIEMLENVVKELQSTPRPKLGRPPKDAHGNERLEVDTAS
Ga0209296_100068122F001799N/AMTDKHLLAQWAKNLLNDDFFKEVIDNLKNEQISVIINTSAEECDRREDAYRHIKTLELITGHLEGLASETVIKEKKWKIL
Ga0209296_100068135F001739AGGAMTTFTTTITAMYTLQQPDPNYVVNALWKITGVDGQYTASIDSSTRFNSADQEGAVIPYDQLTEAIVIGWIPAQDISNAQACVQGQINSLITPPVSPANTALPWSA
Ga0209296_10006814F001097GAGMNFEWPTNDSSRIRTLQGLRSERVDTQIQQKEIDDWLKQSVAMVAGCVRGLGTNQRKVRYFAFEGQNDEVTK
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Institute for Fundamental Biomedical Research
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