Scaffold Ga0209296

Basic Information
Taxon OID	3300027759 Open in IMG/M
Scaffold ID	Ga0209296_1000715 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027759 Open in IMG/M

Scaffold ID

Ga0209296_1000715 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	28281
Total Scaffold Genes	52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	40 (76.92%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

28281

Total Scaffold Genes

52 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

40 (76.92%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F004695	Metagenome	427	Y
F005087	Metagenome / Metatranscriptome	412	Y
F006264	Metagenome / Metatranscriptome	377	Y
F012670	Metagenome / Metatranscriptome	278	Y
F040590	Metagenome	161	Y
F099270	Metagenome / Metatranscriptome	103	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100071537	F001915	AGG	MEREWQLAHPLHDVDDIVEMADSVFGKEADGILTRDRNVFRKNVTITATTQLFDKGREFLAVCRTKPEHKKIVVDGFLDHELIESKLLGYCWFDRGGYTTYANEEISNAKFHHLDLSLPARQRVKLIHEMIDQHILWASTWGIPVICSTSIRSEHDGFMKIHKKRGFTVNGSYAWIRTENGLKGLHEKA
Ga0209296_100071538	F012670	AGG	MKKPKDADLLFGEIRPEGSLVTSPEELEKKKHFMKMKRLEKRAMGLATGEKFPKEEKKPIGRQKSIVNRVTEYGALFNKLNEERLAKGLPPLKTAMEVLIDAMQSEEIDIKDKARIADKLAPFESSRAPIISIEHVNNVNKEEEVSADDALDDFLTALRKV
Ga0209296_100071540	F099270	AGG	MSTNFLYAQAPNRKGNMSKQPPSKSGGATNVTNTKHGVSGPTGQQGAPKAGGDITGRHQKVQVSTHADYCGTIKNDGYMNKSVKNYLG
Ga0209296_100071541	F040590	N/A	MSYGKVISGGARMTNGLTKNINGKLKSFEEGHKRSQTLATAVGKAFNQNPLSDNHLNNINVAAAKKFTVPKLPTNV
Ga0209296_100071542	F001059	AGG	MATYDIEALKEDLPTAKDLAQFVYDKVGISLDLVGKPKEEQYLVARNALEGKKIPADFQTDLNPYIDRKELIPVDEKMQLPPRPADLPDPGSQVHFFGATNMPHPTDPQSDRKVQINFRKYDNGVITFQVTGPIEQVAVGERINKFGQKQPEKFSWIDPRTEEILLRRPDGTFTEKGRGLYAFCVGEKGGGIWTLIDRNVMNIAEKNVTNPWA
Ga0209296_100071543	F006264	N/A	MDDHSTTFRLKLSSQAETCARKTLEWLQKDLQGDRELAPQDVYYLASAADLLLTMRDVYGKK
Ga0209296_100071545	F004695	AGGA	MLDKQNIIVEYIEAPAGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEADSAQANQATEMVKYMINSKNDSYACIRDWAQDSLLHKNGIVMVSPVREPITQYKEVEGTKDQLRVFETMAAEKGLTVKRQNMRKIDVDLEGVMQEMMNPDDDQGTIQEEVNEAIAANTVYRAKYKMTGFSTSVRIKHVAQHYFVCNPTIPGIQDQDFVGFYDPMTIHECKAQFPYVDIEKLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVIMLTTAWIRKDVDGDGEEEIVEVCFSGSYVLYVKEVDFIPLAAMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMAFAMQSSTPRIGVNPEFMDAEEIQRGVSAMFILDRKFDPAKHIYEFAPMQGNLAYVQSSMQRFEADKMAMIGMTSPNDVLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDMIYIVWKTLIQYSDDYNIQQLAGVCGKGAPFMDAISMENYEFIDRKLINIDLALGFMSDENRLTRQQLIGQAQQQFTQAMMGLDPSVPELFGKLRRPFEDTLRVLGVKDVDAYLPTLEEAAKIIKAQSEKGPSAEQQKIQSETDLNKAKIEDTMANTAFTQKKAEDIDTDNMFEALAAKRGKLHSVQVD
Ga0209296_100071549	F000857	GGAG	MTEDDDIKVNEEYYSKGILEAGVDGVFRHNDKLFNEVKSGTWSQTFKTDNIDYKVGAVNGNRYVQYEQKNVENVKEFCKQQREFYKIHGTDNPFFAGTAHMMQLPKCFAHEISSRWFNNRPWELIKQEKKDKILFYAIVNEYYSDFVCHPSGKIPIPYNPAIPTK
Ga0209296_100071550	F005087	AGGA	MALFIQSANTLVSRIANWVGAIPSSVGINATAYNTTTKVITCSANPTSVVSVGDFIGFSVMGPYALAVSVTSTTITVNDPEGIWDDAVVPTAIIKVPTQSTIEITQSIQMAELKMRTIELPALRSNPYDDVEPAHLITDAKGMAPIPADMCFPILFFQESQPSNQEYEGTNLGPWIVYDRVGDREIIRRRMIDQLYIRPFGVPRVIRASFSEVGPNYVFTPNPGENVIIKAYYQRVFPFLFSSTADVEYPVVQSNAILASFPEGYFYGTLWAYYDKNKNTEEAQKWLSRFDDSYGLIEDQNYKGKWRGGDQHLTSEFQPRTYRYSFK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209296_1000715

Overview

Ecosystem & Geography

Associated Families

Sequences