Scaffold Ga0209296

Basic Information
Taxon OID	3300027759 Open in IMG/M
Scaffold ID	Ga0209296_1001093 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027759 Open in IMG/M

Scaffold ID

Ga0209296_1001093 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	21702
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	41 (80.39%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (100.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

21702

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

41 (80.39%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022399	Metagenome	214	Y
F023329	Metagenome / Metatranscriptome	210	N
F024101	Metagenome	207	Y
F031460	Metagenome / Metatranscriptome	182	Y
F033009	Metagenome / Metatranscriptome	178	Y
F053253	Metagenome	141	Y
F084152	Metagenome	112	Y
F084156	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100109329	F033009	AGGA	MSNSTQLWWKGAITQFGDMQKVYDDETLWTLESKDGSYASVIVNGELAKSWRQEGAWNLARKYAESLLFRREQLLQEGWVTD
Ga0209296_100109332	F024101	GAG	MPKKLIHTMVDELFDKELDSDLIDEIVEERNFIVNTLRSWIETDEVWQQMVDDKEQRKSFLNNMQMLFLTELQNSTLIELATTRHGDK
Ga0209296_100109340	F022399	AGGTGG	MDKKYKSIYSKNGLEVFVNPEDFWADYKVKLHGHNIVGLGRNGFKGETAWMNVTRFVHDQAMEFWDFNLDEINDRLTNDIVKEIEKRFTDAGI
Ga0209296_100109342	F084156	AGGA	MVNDLCWYDTKQGDNCQWECSDIPGSFYCKNCDGLRVWNRFAQAYSFYVREGHYGF
Ga0209296_100109343	F053253	GAGG	MDFDLDTPISKILTDMLDKVEGHMPDCDCVNCNSLEVLAYMIKVEE
Ga0209296_100109345	F023329	GGTGG	MVEETQDKDKDLAQLEAFFKYNISTDEILSGRLKILMADLSWRMDLPTWTKEELDIMCARMDALVEVSNLLYDIQWHRLNWEKRTNG
Ga0209296_100109346	F031460	GGAG	MAKVIDSVELHLQMWSTVVLSAEEIQDIYPEFADMVDFDDTDELEQAIQDHMDMNYLDHIQYADGALDECRIDFQYEDDGSE
Ga0209296_100109348	F084152	AGGAG	MITMEEYKVIDRILVNYLEVGDLIKIKQEVFQVINLVDTPDGWDIIVLDNYDETKTISVADGSYLKIVMIEEYDG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209296_1001093

Overview

Ecosystem & Geography

Associated Families

Sequences