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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027759 Open in IMG/M |
| Scaffold ID | Ga0209296_1001285 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 19522 |
| Total Scaffold Genes | 53 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 40 (75.47%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 9 (90.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000263 | Metagenome / Metatranscriptome | 1424 | Y |
| F000441 | Metagenome / Metatranscriptome | 1136 | Y |
| F000450 | Metagenome / Metatranscriptome | 1126 | Y |
| F000852 | Metagenome / Metatranscriptome | 860 | Y |
| F003422 | Metagenome / Metatranscriptome | 487 | Y |
| F003663 | Metagenome / Metatranscriptome | 474 | Y |
| F004840 | Metagenome / Metatranscriptome | 421 | Y |
| F007644 | Metagenome / Metatranscriptome | 347 | Y |
| F008132 | Metagenome / Metatranscriptome | 338 | Y |
| F013527 | Metagenome / Metatranscriptome | 270 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209296_100128512 | F000852 | GGA | MTTKREYLKQQGITVGARGRFSGAAKTALAEAEKSGIKFEAETKSNKAN |
| Ga0209296_100128513 | F000441 | AGGAG | MTNEYINDQLNKAQKLLWSGSLHEQDEAHNIIAKLIKDREGLIQNS |
| Ga0209296_100128515 | F000263 | AGG | MNAEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLMAEQELADAIEREEESEEAMDSMVRTECEGALDTLVALYELTYQLSFAIGIREENRKDGHL |
| Ga0209296_100128516 | F007644 | AGAAGG | MTRSSSFIEYMKLHLLSLEQDLEMNPESINVIDIPGQIEATRHLLSVATDIMESTNERYE |
| Ga0209296_100128520 | F000450 | GGCGG | MGDRANFVFVDSKGDSIVLYGHWAGHNMLANLADAVAKARSRWTDTTYATRIAISQLVGDQWNMETGWGLSVNSISDNEHRIPVIDFNQQTFSLHEEDDWANTQNKVRGMKNEAIFTQDLSTFCEKYSDQLVSV |
| Ga0209296_100128524 | F003422 | N/A | MDKELISSKYTFICDPNECDSLIELTSSDGFGFPSGVTELTCPCGRKTTLLSVEHATIQPTETKEEQMETTVSPAVEYNPDLLVTYKIVSNYSDPEYATDKVRNIEWELHNARTNSKAVSAIQNRIGLVKDIITEAYSDSDDQETLRSIAEALDIELTRDVEWSATIEVSGVIQLDLLADSDTDIESEIYDNLYVESQNGNIEITDTEVCNVREN |
| Ga0209296_100128532 | F003663 | GGA | MLSTALEILEATKASVFDDEIMGLAGELHTRRNELPDEMHAKFLFMYSSALASKVADLVTKVLLSETEMSALIDTITELDDLTETILEENN |
| Ga0209296_100128536 | F013527 | AGG | MNIYEFNAFINVEAESYDEAIDVFQFQLKYGINKDNVYVADINQLTNNESVEV |
| Ga0209296_100128537 | F004840 | AGGAG | MYKLTCAYDGNAPHWTVEYENEYGAWENFFLFTDWGFADEYSTVNLYTPTGKCHTKVFYRAGRKVVIK |
| Ga0209296_100128542 | F008132 | AGG | MTKWDTIQADVADAYIHLDEVEDVEQEDEQDFFGFSKAIQLDHLTDEELDEVFNMFGDK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |