NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209296_1001297

Scaffold Ga0209296_1001297


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1001297 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19392
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009072Metagenome / Metatranscriptome323Y
F023097Metagenome / Metatranscriptome211Y
F033401Metagenome / Metatranscriptome177N

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100129715F023097GAGMKTWCVKDHLTGQIFKVLFSEQEFQEFLKKNPDIDECIDCIECEDAPSITLE
Ga0209296_100129727F009072N/AMNKYNTEDYFSVIETRTGRKILDCGEESDALAMVAFNPANRSILRNKFLMGQVIDIVMPKALPTNEIAINTKPYQDHQDEWMVEKINQLPQIKLPEGQQKPFRV
Ga0209296_100129732F033401GGAMSNFMDLHNLVTTECERRGLELIHLPEKLVRRSTDVIVSCPCTGQRNMSIRNFIFTYEKGGEAFCCKRKSKVGKNNPAFGKPTWNAGTVGVSKSYGFFGFKEEWADREDYLYFIETIYGTYKIGRSFHGIKYRFTETVKELGEWKASHKEVFDCERYILATYKHHQNKIGGIIGGSEHFTKELPIEEIIEYATQNLSVSRNLY

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.