NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1001420

Scaffold Ga0209296_1001420


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1001420 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18454
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (12.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013630Metagenome / Metatranscriptome269N
F058191Metagenome / Metatranscriptome135N
F091588Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100142013F013630N/AMSTTIKLGGAEHPLLFNMNSLRNIMEVAGMETFADLNLQKDLAKSMDFALSCAFYGILEGYEAQDKPTPYPTVQKLGAAIKKFQEISPALEGFTAAITEFFAPADEEAGE
Ga0209296_10014202F091588N/AMRKKIELTEPVEVTAGVTFRVEPSGLYFIICRNQGSGFKPCGKDGLWSSTPHLYRNQYLAQLALDFFFANS
Ga0209296_10014208F058191N/AMLVKFLINPTGHFNLSYNLGEVVEIENKQAELLLEAKAVEIVAPAPKPSKKKPVNPETELDAE
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