Scaffold Ga0209296

Basic Information
Taxon OID	3300027759 Open in IMG/M
Scaffold ID	Ga0209296_1001481 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027759 Open in IMG/M

Scaffold ID

Ga0209296_1001481 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17992
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (73.33%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

17992

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (73.33%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F011761	Metagenome / Metatranscriptome	287	Y
F026558	Metagenome	197	Y
F028717	Metagenome / Metatranscriptome	190	Y
F042895	Metagenome	157	Y
F058142	Metagenome / Metatranscriptome	135	Y
F079592	Metagenome	115	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_10014811	F058142	AGGAG	MAEVTYSVLNEPYVKQSQIVAVTRRDIPTAWNIPIFDDFPSDSEVVRYGIYISDVHLVERNPHQLGIQYCGAIYHAYDEFNITYISYQDDPYNVAVNSIIANLVTAVKDDGIQLMDGYFERDFNQVRTYGP
Ga0209296_100148113	F042895	N/A	MVTELSPFMNEYEVDKCISFMFTLEDTKYDINPSPEDCKTQLSIMLGSDRFLELTQKWGAKNQKFLSVFGTLKFKDKRDGKFYDGLDETDNVEDYEKVYI
Ga0209296_100148114	F079592	AGAAG	MIEYTYKLYRDDDEALVVTVDPLVKDIEQSLEKLMEMNVDDLSDENKQIFEMKILGLRTIHQFLGALQQEQYLKEYKQGLTTELKGKVNIDTNQVIDSITRGALH
Ga0209296_10014812	F002260	AGGA	MSVPYQRISNATVEDIMFYDPAAERRAAALNVDWAPYFKVGSQEWLYKLEFGWWQKYCDTVLGAYYYANLPDGQLISSFNPSLLIKSDQTLIRLDTFGAILVFYESLVTDVSNMNEVDVQNYEFAKKRCEDEWTKALQLMNFYDLYMDNPQGPTTKLEENWTADVDYFNGDRRYF
Ga0209296_10014813	F011761	AGGA	MAYVLGGPNNEGDGFTTAISNFALRAMHESNGLVNFTNVVTPTQGQTFLVPNFAPITYADYNANSNVGTWGTGNANVQNPSLEQASITATPAVATTAFDIFYGWTTSFTLAATLGAELGESFAEKVDQRVTNAFLSFKATPSNTYYATSADGFDRVLQLGAMELLPSGGTASSAVTGFTATTVTEMIRNIKQNFKVARMPGNPMIVIDSNGDDGVIGSSLNRLLSELTGGAVSQTGGSNLSALGNELLSTGRIENIYGCMVMATTFLQSATRAIVSESGGSYPVLVGAYFGDSALFTVMKEGLQLKTGETPGGLQIWLTGVGYFGSGVGDLRRGGAINIIQA
Ga0209296_10014814	F028717	AGGA	MDQQSFVGNDSQTNANQSVETQEGGNEQLNAGAIRKSTTQGLLTALSNASGTNFTSVEDALAYIARTSSQQLVGNVQPVEQPKVQQSSGRVTTNDLHERFNELSQNLARKEQALREKELDSDIQRAMGDRFDTDLIDYALNKVKNNIQWNDDGTYAIVNQRGQERYGSDGMPLTIQGLVQEVAQGNPKLLKQSNSNSGSGLRPGQGSFTGALEESIPDYSRDPAAFNAWANKNGLGKGIGLKGLGVSATVSSSSRKVL
Ga0209296_10014815	F026558	GAG	MYNNRDLLKRNPIYDNIYLQMLSYQYAYLGGITFKQAVRKKRPSEDSTLYMDLVANTVAQPICRYIVDTINDVLFEPGIKRNLQFCTPQGKAIAPETNEWIDLFQLDADLTNRSMNGFMEGVGDLTSIFGHCWVAVDMPQETEGNLGRPYVCAISPLDVWDWEFDFYGGRPMLKYVKIKEMEETDYYYIKCYHLGDATTPSYWESYEVQKGPGKENQPAELVGRGTYPPGMSLPVFISYGRRDPRTMECGVSDIDSASDAQKEYYKLECEKYTALQFAHTIIRADKGISVPVHAGAIVRANEGQIEAIAIDTGDVDAIIKAQDNILEQIEALTGLGGLRTSKNQVASGVAIIEERKQLHRTAKAKARLMEVTEEMIYTFAARFMDQRWAGEVHYNTDYEAHDTNYRMALISKANELVGENEIVKSLITKEIIALLSPSEDIPEYEQVYINTIPDSQLKALMQDNNDEILSRDLEPSMIPVHEHYGEDGDGKEQAEMDNEDGESDNTSILGGAGTPITNIGTTYYTEQVAPALLIGGTAGR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209296_1001481

Overview

Ecosystem & Geography

Associated Families

Sequences