NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1002245

Scaffold Ga0209296_1002245


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1002245 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14025
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (75.76%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001008Metagenome / Metatranscriptome807Y
F007163Metagenome / Metatranscriptome356Y
F034176Metagenome / Metatranscriptome175Y
F075746Metagenome118Y
F091317Metagenome / Metatranscriptome107N
F091434Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100224513F034176AGGTGGMRHNYAKQKDSDEDFDNFISKFECRIEDSREYNQYVRPTPYYRDVCSIDDWRMETKIIPMKAIHLTSDNLARLVAEQEHIQHLMKDAEYGKKCWDHERRDSMVRNGNPAVDNAYQKYIMLLELARK
Ga0209296_100224528F091434GAGGMTLRKILTVLCNKFITGLAIYGIGMSLAYAGYNGQDYDPNYDWCDPRFCCPPKSDV
Ga0209296_10022453F075746AGGAMTIFIPVLFICLNGNCEFMQGKTHYKIEAQCVASLDMQKQHMRNLVKEAEKQGTKGDITILEGTCIDAEIKTTQGRVT
Ga0209296_10022454F007163AGGAMTLEDLEYIFEYQIEEGTEKLYFMLTDGDGHPVIQRHPADDLHGLLPMLDSFQYTGHNVMPRFAK
Ga0209296_10022455F091317GAGGMKVGGIDPAMAHNIELAKLTQQQTIKQQQLKVIEARQEEIKQMRPPDPGKGANIDEMV
Ga0209296_10022459F001008AGGAMSKAKHKPYQWIDGETADRITSLNLKDYRAYLKKELKQWKKNPKSDSNPNGYWMHPGDVGINMQTIAALDLIISHFPSTSDDIK
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