NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1002587

Scaffold Ga0209296_1002587


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1002587 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12893
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (60.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004430Metagenome / Metatranscriptome438Y
F009461Metagenome / Metatranscriptome317Y
F009887Metagenome311Y
F045748Metagenome152Y
F066709Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100258715F004430GGAGMANGREVLEMLIPQGGWIISGDTYEGIEFLECEPITKEQFEAGFAQYDAWKAEQDSARTTQKAALLERLGISEDEARLLLA
Ga0209296_10025873F045748N/AMLFWEKVGFDAGEEHVVVMCVKCENTGVKARIEAMTDKSVVRCNKCGAWKMESGSCYTCKKTNAQSV
Ga0209296_10025874F066709GAGMANLSDWDLDFRFGQEGEVAANALLTAPIETVEVKRDRRWKDTGNLYIETDCWSDVRQEWYWSGITVTKATHWSFVLEDILITVPTDKIKLAVKTYGIFKEMNRPEYSTKGYLITVDNLCKVAFV
Ga0209296_10025875F009887N/AMITMGDMEMIDSTGMRATFTDKGVVLDVVPLSECCEMCNDPRLITVDGIKKCVACGCINHIELNHHG
Ga0209296_10025878F009461N/AMGERMKINGITVLWFMVTTGLISYALHLLRVESYNKGYWRGRAIGWESHRRLTNIKQKSDEVFDYEKN
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