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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027759 Open in IMG/M |
| Scaffold ID | Ga0209296_1003183 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11263 |
| Total Scaffold Genes | 25 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (52.00%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001964 | Metagenome | 610 | Y |
| F002227 | Metagenome | 580 | Y |
| F003748 | Metagenome / Metatranscriptome | 470 | Y |
| F009134 | Metagenome | 322 | Y |
| F010673 | Metagenome | 300 | Y |
| F016253 | Metagenome / Metatranscriptome | 248 | Y |
| F048938 | Metagenome / Metatranscriptome | 147 | Y |
| F086598 | Metagenome / Metatranscriptome | 110 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209296_10031831 | F009134 | AGGCGG | MQTVCIEKKTQSLESLSVLVRSKLAADAASTLERIDSYELDGIKDESTREQILGSVAKRSALVFGWSEGNESASVSINLLGSMPDKLFHVEQSVNPV |
| Ga0209296_100318312 | F002227 | N/A | MKLTIQSKQNAQTIVDLFNAILTGEEAENGATPLSIYDDNKHICSLVAKDGTQILELIIEREEGDRLLQIGEVEELK |
| Ga0209296_100318314 | F001964 | GGAGG | MSRNLFGKPVYKVQISGAIGWSDLKERVVRHETVEFASRKDAEKAAKELNPGEYTQGRIRVVPVELGEDYDIYPVTERTKP |
| Ga0209296_100318316 | F086598 | N/A | METEKSSVLKDQLEKAATMFKRISESVDRIEKTLKEHERKIDEALKRSSCQDDDDDSAWEGFGPKPEKQPFNPNAETYTLEVSCGPQTIRRDDDEDDKTWAGRKKHLMNRRVLFLNSSGVVGTPEQEAYLKEIYDRLTAHGR |
| Ga0209296_100318319 | F003748 | N/A | MFSVNRKDAGGRYIDSEGDYTVTVSKVEETLDAKGREVCKVTFKTEDGASITDRFINQENVWFRVNQLVAATKHNVPDGTQVDFLGTKGSYAAFLKTMIGLELLITARSEEYQVNGETKKTLRIKNMREVPIAEVDGDDLDAKPF |
| Ga0209296_100318321 | F016253 | GGAGG | MKDSIKKIIDGGTGVYSISKQEAGEIHKAAKRVKNYEVSYWTRNKKRKEAK |
| Ga0209296_100318322 | F048938 | AGGAGG | MTREQTIEAIGIMQAFVDGKEVESMYNGVWSIIYVPRWNWDDTQYRIKPTAKLRPWTADEVPLGMQARNPQYPKTRWLIDGTSSTENRQDWLNKKYEHSIDGGKTWLPCGVMEEAK |
| Ga0209296_10031838 | F010673 | N/A | MNPKLIPVLEKLISRDVILQFFKPDNLPQSALAYIRHTYVMCRSLSWEEHDLIESLPALSDNRSESIRDAGGIGNPDSSVYHLFDDGSLWLKTNAYSSIWTDARDFAVEIILPRMTLSRMDAQLLRAIDMDDAVESVRADFYSSFAETLNRECGIPYSDAREHWNAYSRQLGDGAREETELGGSESGRAEGLRFAESFTINA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |