NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1005216

Scaffold Ga0209296_1005216


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1005216 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8353
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (88.46%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000808Metagenome / Metatranscriptome882Y
F002515Metagenome / Metatranscriptome552Y
F005531Metagenome / Metatranscriptome397Y
F011386Metagenome / Metatranscriptome291Y
F017133Metagenome / Metatranscriptome242Y
F025743Metagenome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100521612F000808AGAAGGMEYNYSLTASYDGVLYFTMRTADLMEAVDAWTKCVDFGDAKEYATYNLSDPTGKMYTKTFYRNGEVKVK
Ga0209296_100521617F017133GAGMASNWTTFAKATHYPTGMMNTCPCGQVVLAPALYHEGETYWENPNKCKELFEENK
Ga0209296_100521624F005531AGGAGGMTITYTLWQGSQLLAVNQKANKPEEILAVIAELNKLGKGFTYKIREVETK
Ga0209296_100521625F011386GAGGMKVTLTSMQGNTRNIELMTKQEVLDFIDLFKTTLHANQRIKITCDLLGIDGYVQGVS
Ga0209296_10052166F002515N/AMSTRKSPEELRRLIELRRSNAASAVPSKKVYSRKGKKSQSLMLELSKESE
Ga0209296_10052168F025743AGGAGMTATMETMQFVYADLLTPAQLMPGDLINIDDDIVEVLSVIDDARGDNYTITHRNDFGETDETHCTFEDMFKLYVFIDNE
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