Scaffold Ga0209296

Basic Information
Taxon OID	3300027759 Open in IMG/M
Scaffold ID	Ga0209296_1005502 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027759 Open in IMG/M

Scaffold ID

Ga0209296_1005502 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8085
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (54.55%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

8085

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (54.55%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay → Streptomyces phage Jay2Jay	(Source: IMG/M)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay → Streptomyces phage Jay2Jay

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001106	Metagenome / Metatranscriptome	776	Y
F001229	Metagenome / Metatranscriptome	741	Y
F005054	Metagenome / Metatranscriptome	413	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_10055024	F000258	GGAGG	MTPNYKLDAMLELRKFLWSKLKTAGIFDDEDYYSDNLNESIVPIIPVQQAAEMNQFLSGKKHIVYDKIGMSYEDNWAICCEQMLFTIYATEISDINEIRNFMTDQFRRMDESARDVNQFATLSNKFRFHSIFIADISPTEPSEEIQGFFSADVILEVKYSRVLDSVGRFL
Ga0209296_10055026	F001229	AGG	MNSIIDSVLSMNLDVYRQSEIQDADTGAIVKEFNYYKTIPCHAKGVISNTSSLISGGNKQSFSNKYADEQVIQVRTAEKLTAREKVTNIRDADNNVIWNEINYPSETPTVFEVMGTTPILDPFGHVIAYNSSMKRSENQRIGL
Ga0209296_10055027	F005054	N/A	MAEILIGSQSPITHQVFWNGDVATADSLPTVKVYDVTSDPLVSPAVLPTTLLVTLTSALDENNPGTYSVNIPYSLTNRNKTLSVKWEYAVGGTAVVQSYEIKVITPYINFNNIQDLDFSTDPSDPNYKPYKELIKAERYARKLIRQYTGQSFYLEDKLYAVYGYDSDTLPLPAKINSLHSLYANDILLVNKITNVDNWNYPVQISESGYGIRINRAAMLDNTVYTANGMVPPTIHDYSGGFQSGVCYKVSGRFGWDKVPDNVKLAATELMKDYFSKETAWKNKYVKSISTFDWDFEYTGNAYTGTGNAFADNLLAEYVLTNKVEII
Ga0209296_10055028	F001106	AGGAG	MSFETLKVAELRKIAEDFAVDTEGLKNKNDIIAALAEEGVTWSVYNKTINKIEEETEDMSEETIPKFDPKAEQPENTVLVRMTRDNFRYDIMGFTFTKEHPFVAMVSDKAQEIFDKEEGFRLANPKEVQDYYN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209296_1005502

Overview

Ecosystem & Geography

Associated Families

Sequences