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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027759 Open in IMG/M |
| Scaffold ID | Ga0209296_1010036 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5718 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (66.67%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay → Streptomyces phage Jay2Jay | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000258 | Metagenome / Metatranscriptome | 1443 | Y |
| F001106 | Metagenome / Metatranscriptome | 776 | Y |
| F035307 | Metagenome | 172 | Y |
| F056615 | Metagenome / Metatranscriptome | 137 | Y |
| F058150 | Metagenome / Metatranscriptome | 135 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209296_10100363 | F000258 | GGAGG | MTDYKADVMIDLRKFLWSQLKSNDIFTDTDYYSDNIGQEIVPIIPVQQSPEMNQFLSGKKHIVYDKIGLSYEENWAICCEQILFTIYSTDVSEINEIRNLMTDLFRRMDESARDANAYSGISNKFKFFSIYVADISPTAPSEELAGFLSADVILEVKYARHIDTVGRFL |
| Ga0209296_10100364 | F035307 | GGA | MSGTSGKVLKDSTVAQISAAVYYHAQVVAKLTTSKAFEKKFQSVIFKQIEEDFGLYVDSQARMNPKSLHHVYEWNKTGNKSARLFKINVLSTDGLSFKIGSKFLLSKLAVPNEFSKRKHVFTSKASVMEAGMPLTIRPRYAERLVFETSTGVVYMPKGASVTVTRPGGGKATGRFQIAYAQFFTGNLVNSAIKKSGFQQIFNSSLTKAMRVPSNVRKVKYSFSPNTLKMQADSAVEAAFGGAV |
| Ga0209296_10100365 | F056615 | N/A | MYDLVDSILNMYMDVYKPFDFQDPDTGSIKKDWQFDRTVSCSAKGNISNSSSTISGDKQVFSNKYKNEENLQIRTSEKITLREKVTNIRDYEGTVIWEELNFPTNTPTVFEVMGTTPMTDPLGGIVGYNSTVKRSDNQTIGQ |
| Ga0209296_10100366 | F058150 | N/A | MEILVGSNSPVTHKVFWQGQLTDSDSLPVVRLYDITEDPAISPAINPGTILATLVPIKSEVDAGTYVVYIPVTYTNRQRQLRLNWSYAVGAVSTEKNHKIYVQTPYTDLSQAIDSLGLGSDFSDPNSKSYFELCSAERYARKLIEAYTCQQFYLYDDVQIAYGSGSDVLPLPYKLSELHELYQNDILLVNTLTNVNNWNYNTIISESGFGIRINRANMLDNTVYTANGMVPPPINDNYNGVFSSGSTYRVQGKFGWEEVPDEVDLACIELMKDYFSKDKVWRNKYMKSIKTFDWQFEYNSGTYSGTGNLYADQLLLPYVINKMVVI |
| Ga0209296_10100367 | F001106 | AGGAG | MSFETLKVAELRKVAEDFAVDTDGLKNKADIVAALAEEGVTWSVYQKTVEDIKKSADEFSEDAEEILPRFNLDSQPENTMLVRMTRENHRYDILGFTFTKEHPFVAMTSDDAQEIFDKEEGFRLATPKEVQEYYA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |