NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1013704

Scaffold Ga0209296_1013704


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1013704 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4781
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000808Metagenome / Metatranscriptome882Y
F003393Metagenome / Metatranscriptome489Y
F004431Metagenome / Metatranscriptome438Y
F005348Metagenome / Metatranscriptome403Y
F018352Metagenome / Metatranscriptome235Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_101370416F004431AGTAGGMTITYSLWDGMQLLGVDFKASSADEMNTVVAELQKVSKNVVAHMRKVEVA
Ga0209296_10137042F003393GAGGMIDLENDDTIQIVDYVKVDILNAGQLEIDDCILVGDEVVSIVDIVSLRDGYTLELVNDFGEREIIEVGEYDQFDLMMLQ
Ga0209296_10137044F000808AGGAGMEYNYSLTTSYDGKLIHTLRVSDMLEAVNAWDKCVDYGTAKEYATYNLSDLTGKMYTKTFYANGEVVIK
Ga0209296_10137045F018352AGGAMGKFKDTLMEILAHDDCYGAGWQFTGNAIDYDVWACECNPYNIPADEIQEYHQLFKTKEN
Ga0209296_10137048F005348AGGMINSVMAFNCDECNGQGLIFWGNDLDYDVEKCDCNNFALGNLFTSGEAN
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Institute for Fundamental Biomedical Research
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