NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1017245

Scaffold Ga0209296_1017245


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1017245 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4182
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031492Metagenome182Y
F032578Metagenome179N
F035297Metagenome172N
F048305Metagenome148N
F049615Metagenome / Metatranscriptome146N

Sequences

Protein IDFamilyRBSSequence
Ga0209296_10172451F035297N/APLTDRIKAGWIIAFTMIGWMFFLLPMTGEDIPEGHPTPVSQQAWITWIIINFVLLICVHLLISKEHRAMKRGIKTMKRVELARQMHPTRKHD
Ga0209296_101724510F031492GGAGMSQYNKGDKVIIDDESGVIESVLVGAEGTLYDVRYGHTFMIATDVPEEDIYPWMADEQ
Ga0209296_10172455F032578N/AMIDPIEGRTYDLRNEDIQAINYIKTQIQSLDHERRNEYATLLIDAQSTKRNINLSANKSHRRYEIARGILLLMQDGQFDRDLVKGICSHITNDTYTKAGEALGHLNATQAEQFAQICYGITADQVTIQYIPEQNSFRVQEVRQ
Ga0209296_10172458F049615AGGAGMTPDNTNLIAELEQRVSELSAALELVTEDRDNLRDAGNSLMHELDLCRATLTQAHSDISRLRVWLAQGAEL
Ga0209296_10172459F048305AGGMGMSDYDMHIKGQDFRISELINETAMEQLQTRKLEIQVVELCSEIARLNSHIQTLENTLSAMSGELHALRMETQ
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