NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1027416

Scaffold Ga0209296_1027416


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1027416 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3173
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013634Metagenome / Metatranscriptome269Y
F031456Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_10274166F013634N/AMSNCNRTEAMPIQLAPLVGAGLGALQQSKIDKALAGEKIYTKPKTIFGKLIGGVSGRTAAAEASASVKTAPINEKVMNSLQPTSSNLDPSLRQSFPVTGGVQFGTQAKSRPWLPYAIVGGIVAIFYFMRGKKGRRRRY
Ga0209296_10274167F031456N/AHTINRNLTKSYMALIGTFPASASAVFNLDFLPEKVLVQNTANSQQALSNLSVVTSGVQLFSITSIARITALAKFDSGAILGLDNTTGSYIRLATGRINKATTITGTNSVAAVRDFYAASTNLSNIARRAVEQSINPSANATFDNFEALFFDATNLLRAQITFSNGFTDEYSPAELLALYANYHVADTQGKLDGLTCIDADSGAGLIAQVVLFNGSGGSTVVLKSDYVQL
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Biomedical Sciences Research Center "Alexander Fleming"
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