NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1029098

Scaffold Ga0209296_1029098


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1029098 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3062
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002269Metagenome / Metatranscriptome576Y
F007029Metagenome / Metatranscriptome359Y
F029049Metagenome / Metatranscriptome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_10290981F002269AGGAGMKEQAIAIGKSYLRSAIACAAALYMSGITDPKVLANAFIAGLIGPLLKAVQPSEGQFGVT
Ga0209296_10290984F007029GAGGMGFLDGYEDVNARIKRFRSEFPSGRLVAFIESFDIEKGTILVRAEAYREYEDMVPSAVDYAFGNVNTYPQNMRKWMVEDTITSSYGRVIGLLTPSLEHNSRPTVQDMEKVETLPASADPWSTKASIEDMATMATAIVEIGTQLGGELVAEAPRCPHGTMIWAEGKAKSTGKPWAAYKCTEKLRANQCTPYWHVLGFDGKWKPQV
Ga0209296_10290986F029049GAGGVVVCRMSQLAKVILDRSQEITAHKVGLERTIVRNANTSDVSNFGQVYKNWHELVWQEAEGASAETAVANYFGDYAFVPKIHNAHEEADVGENIEVKWTKHTNGHLILQNRGPGRPNDVAILVTGWSPVYLLLGWMPVHMAKVPKYKHPYQDNYWVPRSNLFEMQYLKRSQYGV
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