NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1037523

Scaffold Ga0209296_1037523


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1037523 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2617
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F001460Metagenome / Metatranscriptome690Y
F007468Metagenome / Metatranscriptome350Y
F009685Metagenome / Metatranscriptome314Y
F013414Metagenome / Metatranscriptome271Y
F033433Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_10375231F013414AGGCGGMSKAQEIKVAEAIVNLTDDHWFNPAILARYLTDQPFYTVDRIMELVAQIIRWEANRYNDELTTESGIYNSGLTSEGLFLANELNQTLNKLIKTYKWENIKLPVDPDKVIAKLPKAEEKSYRHSWLHDETREPVLVSHPFI
Ga0209296_10375233F009685GAGGMKMSDQHIDAVLAEAQRLLWGGSETENIAAHNLISKLIQDRMSEKILK
Ga0209296_10375235F033433GGAGMYDKPSLEILEVNYSISPGGIDEFEVYSLDERDHSSPPIFSSPILEESVRFCYNLGKDFTIRTLAQWEERELAYEASR
Ga0209296_10375236F000263AGGAGMNAEDIGLPPHLQRLVNAGVTGLDIMHGELKNLMLIAEQELADAIEVEEESGEAMDSMQRTEATGRLDTLVELYQLTYQLSFAIGARDV
Ga0209296_10375238F007468GGAGGLTTQTKSSYFLEYMKLHLISLNQDLEGDYNVQSKINIQGQIMATEHLLSVATDIMNSSNERVYG
Ga0209296_10375239F001460GAGGMLGYTENDLNRMINAIHDSKLFYLRTPSDLMDKEPLRKDLEDAVSFLQGLWAEGYFDYTN
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