NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1043920

Scaffold Ga0209296_1043920


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1043920 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2373
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015732Metagenome / Metatranscriptome252N
F022415Metagenome / Metatranscriptome214Y
F046380Metagenome / Metatranscriptome151N
F051133Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_10439202F051133N/AMKIDRINNRNIELDRLERTNHQRKIEEDYRKVIDKRNIERIIADRVERNMRLDRDKGRYIDVDV
Ga0209296_10439205F022415AGGAGMSRMSNLHMVITDAIACDLSEDLIIDLMVEEGLPREACPEILRVFKQVESANE
Ga0209296_10439206F046380GGAGMSNWKSLDQSYETMSQAEALEIVQLEATALGLPMLETLMHMQDNYEELDSVQKNAFRTAFRGFQRLLAPA
Ga0209296_10439207F015732AGGAMTKVTNIETAVSIVRNTPDKALALSEIMNILGVSRSNAFVYHTKASKILFSADKVDGVMAKVSPQYKKVTESVQGTSSTKKAQKLAEIDAFLANAPTAKGNPFASLGA
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