NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1057998

Scaffold Ga0209296_1057998


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1057998 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1990
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036073Metagenome / Metatranscriptome170Y
F088194Metagenome / Metatranscriptome109Y
F102437Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209296_10579981F102437N/AAFEDTVLSVREPRELKGSLICSIQDSDIPIIDKRKLIVAIDRCMTIKDIQRLFYNALLKFEGHGVL
Ga0209296_10579984F088194N/AMNEVAATSEETTAYALGSTIGTLLNLKRMVEQNMTDYSSNLEGMRGLHPMWSKSELMDQFDRAINKLNTITYPYKV
Ga0209296_10579985F036073AGGAGMTTEQATGYEAPYNAELHCKKIAWMVKNSPDWDYEKQTLEEYLETVPDYPTDEQVAGFNHLYVAPFVPFKKEKPYEGEQVNEAS
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