NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1086596

Scaffold Ga0209296_1086596


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1086596 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1529
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025742Metagenome / Metatranscriptome200N
F027416Metagenome194N
F038092Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_10865961F027416N/AMLTIENIQKLKGLKVGANGKVWKILRTNQMDFNSENIYSIVLRTYPDNIHRIHLYLDRELKDGDYHIHSSKSNIKKVVERQDMVDVYNFLRLI
Ga0209296_10865962F038092N/AMPIIPTPPPMTLRQKIQTLQGINNMTPQNNVVQQIRDIAEEQAKIALAELMKQEQEKRKQTILTIENIDKIKGHKYSEWLEVGGVMESDNHYEFTLLDEKGSQVETILLHRRQTSDKRYIMEYNNQTLWITKDRLSTIDGIIECMREI
Ga0209296_10865964F025742N/AMLTIKNEDKLTGTALTGAGPDGPIAWHVSGIGKSLHHYIIYLTRDDNGWERKVKLDRYHSVNQTGKQYKLECGTDHMHLYKTSMDKIDVFTNYLEYFI
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