NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1102740

Scaffold Ga0209296_1102740


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1102740 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1362
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001872Metagenome / Metatranscriptome623Y
F010535Metagenome / Metatranscriptome302Y
F044439Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_11027401F044439GGAGMNYLAEKIIGLVLCTVFGVTALTGAPSVSSAPSGTIALAPLNAQTYLIEPTTTTSSTIYIDPYTSACEQFSALAINLGWPADQRTVLESIMKRESNCTPNAVNRKDPNG
Ga0209296_11027402F010535AGGAMTDPQIVDYSVYIGVMDNGQEILVQIFTEPESGKYLQGQIAFRSHASSWSVPIPLEKR
Ga0209296_11027403F001872AGGVAIAKAKSGVPNARDYIGNADGASPAPRAGMNEWIKQAIAASNGALWNNGSWGQRDMRGKPGSLSVHATGRAVDLSYRKSEKNPKAGRKEALVFIDKVVANANDLGLQCILDYIGPHGRGWRCDRQAWETYTKETIHGVPGDWFHIEITPQAADSVIWVKAAFLKVFGEIPPKA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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