NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1140432

Scaffold Ga0209296_1140432


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1140432 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1098
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006843Metagenome363Y
F014620Metagenome261N
F037730Metagenome167Y
F055728Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_11404322F014620GGAVDNQLQMFAPTIGLGGTFERPAINRDIVIIAREAKQTSVDAALKMKPKTGKKRARVHAYLLGRPATDEEIETALNMSGNTVRPTRGSLVKDGHVIDSGVRRLTRAGNEAIVWRCV
Ga0209296_11404323F055728GGCGGMRRSYDPHYGSREQLRAQSEHGMKVARERDTLKAENAELQKQITELKAIIAYMTEGE
Ga0209296_11404324F037730GAGMKEFNETQSTNEYLIGELVIARKRNEVLTEHIATLVKHIETLAEDLKVSSQLLDACVAYM
Ga0209296_11404325F006843N/AMSNFMDGYVDVATRLKLAFEKYPDLRIQETQREVIEMPDKSCFIRCTVTIWRTADDPIPCVASACEIYPGRTPYT
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