Scaffold Ga0209598

Basic Information
Taxon OID	3300027760 Open in IMG/M
Scaffold ID	Ga0209598_10002555 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027760 Open in IMG/M

Scaffold ID

Ga0209598_10002555 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14177
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (72.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

14177

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (72.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006891	Metagenome	362	Y
F007911	Metagenome / Metatranscriptome	342	N
F015449	Metagenome / Metatranscriptome	254	Y
F024499	Metagenome / Metatranscriptome	205	N
F035218	Metagenome / Metatranscriptome	172	Y
F057981	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209598_100025552	F024499	N/A	MSEFTECLKESLTALYDQTGTAATIGSTSVTGILSTITRKQAVELGGFDLDLNSTFTIDITGIATAPTIGSVLVANSVSFRIVTLDTSIGSYVLGLREF
Ga0209598_1000255520	F035218	AGGAG	MPLTKNPSNIDNFLFASGRMKMYRVGLAGSYTKVTGTGGVASIGNTGGFNINLNAGSAANGTSKAGYFDPTAALMTASAGKIDYSKRIRFSIGGMMYLASTNSVIRMVFGGTGNSTDAPLAGVDGLTIKGFGAEFALQSGVIQARLIGFNSAYLTPTSYTTLTNGFGLASSDNRFFGVVIESDGAGNIYLYGADSQTNPAINIGQTPLLTLTGGPTNDTSTNRFGPEIHCSNSSSLPTSSPSAILQSTHWLLDVQ
Ga0209598_1000255523	F006891	N/A	MSTDQVAELSERLSLVRESIARIEIRQSVILDLLERSQASLGEYHGRLTNMERDAHTIKTKLWLVALVSGAVFSTIWELLKRRLSF
Ga0209598_100025556	F007911	GGAG	MPAVTMLDRLVEAALQELLATTVTGVNYHLSHDKTENLPPSIVIKATLGTEEPVQGSGVFSVPVDIIVEDSYDDTTVDAHTQKCSKILQTFYDSSSLATRLNATTAIGSARCYNAKVDSVEPEADDEERTMRRTYKLAVIAYPNSIAS
Ga0209598_100025558	F015449	GAG	MVDSFWGTTNIKVAAAVAAFGAKLRESDPVTCIVEEGGHRKFTFWFSTSGDQDAKAEMERTWADMKSDPEAAIRYVRAALENRETLLGLMKRAEPIMSIKRGSQTLLISERASPELKRTMIKKL
Ga0209598_100025559	F057981	N/A	MSEEALLQELDNSLISPDRFFKDQRLAPYTEGSRLLMLQVRDDSDSAIYFVWSFIYLHILLAEDRKKTIRLAWDKDAFREKLMDWIAEMSEDDRNTASLMCSAILLEANKARVNVIPSAIAAPPGNA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209598_10002555

Overview

Ecosystem & Geography

Associated Families

Sequences