NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209288_10020407

Scaffold Ga0209288_10020407


Overview

Basic Information
Taxon OID3300027762 Open in IMG/M
Scaffold IDGa0209288_10020407 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm September2015 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1899
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Namenear Jamestown, North Dakota
CoordinatesLat. (o)47.0991Long. (o)-99.1044Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001018Metagenome / Metatranscriptome804Y
F002738Metagenome / Metatranscriptome533Y
F013517Metagenome / Metatranscriptome270Y
F044444Metagenome / Metatranscriptome154Y
F093735Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209288_100204071F001018N/AMSQITQVKLKDLNVLKLYEHYASLEKSLPLLTPESRQLAEAELEACAHLRSEKVDRIYYAMAAHEDALERIKKEGDLITQAKRHHESQLRSLKNLLSYLRRVLPQDSNKITGRNYQFTLVKKKELTVEISTDPEFWHTKERELYCIAEEVTTTKRVVLRSMSGEILDERIEPKTTTKIVPNLDAIRSAYQSGQKLPDGIKVQQDYAVRSARIF
Ga0209288_100204072F013517N/AMFESFFAAVLPVMKDLLWAAAGMLLTYCINKLQSQFNF
Ga0209288_100204073F002738N/AMSIDTYGLTYEQYAEFFHKNVRFAAKLYLDTCNILTGEGVGNVDFKTVLDMYQESVYTTNDDCRRYQKSNNPEALKEATVEIFGITPTREELMEEIQSVNAKVEALTDYVANLVTITTSGLEGIATTLDKVD
Ga0209288_100204075F044444N/AMSDPIFDDILDYARKLATQPKMISHLRYELDIPEDTHWELVKLAADLKMHHEDYAIHLLIGHVESELDRKAQD
Ga0209288_100204077F093735N/AFTQNHAWDLFFNMMEAGYVPFPGVALPQLKAAIKK

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