Basic Information | |
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Taxon OID | 3300027762 Open in IMG/M |
Scaffold ID | Ga0209288_10020407 Open in IMG/M |
Source Dataset Name | Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm September2015 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1899 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | near Jamestown, North Dakota | |||||||
Coordinates | Lat. (o) | 47.0991 | Long. (o) | -99.1044 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001018 | Metagenome / Metatranscriptome | 804 | Y |
F002738 | Metagenome / Metatranscriptome | 533 | Y |
F013517 | Metagenome / Metatranscriptome | 270 | Y |
F044444 | Metagenome / Metatranscriptome | 154 | Y |
F093735 | Metagenome / Metatranscriptome | 106 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209288_100204071 | F001018 | N/A | MSQITQVKLKDLNVLKLYEHYASLEKSLPLLTPESRQLAEAELEACAHLRSEKVDRIYYAMAAHEDALERIKKEGDLITQAKRHHESQLRSLKNLLSYLRRVLPQDSNKITGRNYQFTLVKKKELTVEISTDPEFWHTKERELYCIAEEVTTTKRVVLRSMSGEILDERIEPKTTTKIVPNLDAIRSAYQSGQKLPDGIKVQQDYAVRSARIF |
Ga0209288_100204072 | F013517 | N/A | MFESFFAAVLPVMKDLLWAAAGMLLTYCINKLQSQFNF |
Ga0209288_100204073 | F002738 | N/A | MSIDTYGLTYEQYAEFFHKNVRFAAKLYLDTCNILTGEGVGNVDFKTVLDMYQESVYTTNDDCRRYQKSNNPEALKEATVEIFGITPTREELMEEIQSVNAKVEALTDYVANLVTITTSGLEGIATTLDKVD |
Ga0209288_100204075 | F044444 | N/A | MSDPIFDDILDYARKLATQPKMISHLRYELDIPEDTHWELVKLAADLKMHHEDYAIHLLIGHVESELDRKAQD |
Ga0209288_100204077 | F093735 | N/A | FTQNHAWDLFFNMMEAGYVPFPGVALPQLKAAIKK |
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