Scaffold Ga0209088

Basic Information
Taxon OID	3300027763 Open in IMG/M
Scaffold ID	Ga0209088_10000224 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027763 Open in IMG/M

Scaffold ID

Ga0209088_10000224 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	41763
Total Scaffold Genes	55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	48 (87.27%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

41763

Total Scaffold Genes

55 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

48 (87.27%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000166	Metagenome / Metatranscriptome	1810	Y
F003265	Metagenome / Metatranscriptome	496	Y
F005903	Metagenome / Metatranscriptome	386	Y
F041723	Metagenome	159	Y
F056420	Metagenome	137	Y
F058000	Metagenome	135	Y
F094801	Metagenome / Metatranscriptome	105	Y
F096599	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_1000022413	F094801	GGAG	MDEIKLSTDLVNAVLQYLGNRPFVEVAGLIQGIQQQASEQGAQPVVAEEPAAE
Ga0209088_1000022415	F003265	GAG	MKWFWLLLICLVFWASAKAPCTISDFYALSWLGNPSERHQRLSEWLTTNGDNCSSEQLVGIWNNLSMWAGVADSAELRAKVLYYYARAVEREKK
Ga0209088_1000022423	F005903	GGA	MITYDPRGMTWDQYCKLMAELFAPNQLGYVPEEKWQDWVNGLNGIGYFVESGIPDARGFKTWQDWASQMTGIMSVTSQR
Ga0209088_1000022443	F058000	N/A	MKKDFTKESNFVLEFFHRNVSGFNLKEIIMTTVATEVQAVATVESLLNPIDQLSVLDRQQKGLAVQVKNLKDTIANTYGEGKHRGEKYGVRVTIENRKGSIDLDALLAHFGITAEQAEQFRGDSIAVIKVSATV
Ga0209088_1000022444	F096599	GGA	MNEEIQTVIFTEENVRISVDEYNEGVWLSLQGHGASMYTTLTIEEANQMLAGLQKVLNKEVTA
Ga0209088_1000022446	F041723	GAGG	MEKKELSSLARQILAKNDAVSFYTQQEFDDSLALAKAEIMAVAIETSKRAVFIERKECARLVSELASQEDNGEVATALVNAARAIYNRIPSQMQ
Ga0209088_1000022450	F000166	N/A	MPNIPTTQDAEFFALCVKKWQSILHLGDWRIEKGLKPAKGAMASVEFNEGARLATYRLGDFGAEKITHESLDATALHEVLHVLLHDLMTAAQDPRSSPELIEKEEHRIINLLEQQLLKDINGRT
Ga0209088_1000022451	F056420	AGGAG	MTLFALEEHLMMLLVEDKLCFEEGDWDRLERIRLAIDDTRDQIAKLQKRVNK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209088_10000224

Overview

Ecosystem & Geography

Associated Families

Sequences