Scaffold Ga0209088

Basic Information
Taxon OID	3300027763 Open in IMG/M
Scaffold ID	Ga0209088_10000235 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027763 Open in IMG/M

Scaffold ID

Ga0209088_10000235 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	40203
Total Scaffold Genes	63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	54 (85.71%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (80.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

40203

Total Scaffold Genes

63 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

54 (85.71%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000166	Metagenome / Metatranscriptome	1810	Y
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F002933	Metagenome / Metatranscriptome	519	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F012214	Metagenome	282	Y
F019121	Metagenome	231	Y
F098944	Metagenome	103	N
F103134	Metagenome	101	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_1000023519	F012214	GGA	MYTPLRTPFTSMSFTPDIPSNALGPNEYNIGKNVEADVRSIKKIFGEIQIASTITDMPIFVEGGFRSEISWVYIVATRNSSSQGKWWMITATGITNITPGVGANPSVYLSGYTEDLNITFSWVGNVFFMNDTLSNPMYFLPTSNEITVTSNAAWNYEPSVTSTTAGFVRNYCSPNVGNILVAGNLTKVIGGTTYNYPTTVRWSQAFANTGIPATWEPTLSNVANEQEVPVRGPLIDGFFLGGNFYVCSYWDTVVFSPISYQNSTAPIFGVRLLNQGRGLFNNNCWTNTDANVYGIDARDIWVFNGSEFSSLGNQKVKDYFFNNLNLTYSGRMFMVNNTQKYQIEIYYPDLTSTGWCNKMLAWRYDLQVWNAPKDIQNACMGTEGPRWVDSSPDYFNLSSRATVYAKGGVSSSRLIETAITNAFVGSAIDAQFERTNVTLQTANGPVPYSNKVYVHRLLPEIAGTGKINITVGGANSTAQTPVYGDTGVTNIDTDTPWVPTQQNSVRTVAVKFSSNDATDTWKMSAMNWQATVTEDAF
Ga0209088_1000023530	F003521	AGGA	MKSLVLNIRDYFNRRTKVIDSHKEANVTRKTLVIENGECAKRLLKNDDFALLFNLYRFYLLEMIEESKDDVNRIDNAQRVAGVRDFIEFIERTEYLGKVANKNVETLTK
Ga0209088_1000023531	F004695	AGGA	MLDKQNVIVENLASSSGNRGLTEQVCHEVYVKMVDYLRLTQSKNTYNRFTDYHYLNIPVSNSTEPIRGIDYIQPIVAPGIDYATAVITKCLMPNGKINFEFERFSEMDGDQARQATEMVKYMLNSKNDSYQVIRDWAQDSLLHKNGIVMVSPVRNPITQYKEVEGTRDQLRVFETLAGEKGLTAKRQNMRKIDVDLQNAMQEAMAPDESEAMQEPTGDELQEALRNNTIYRAKYKLTGYETSIRVKHVAQHYFVCNPTINTIQDQDFVGFYDPMTIHECKSQFPFVDLELLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVIMLTTAWLRRDIDGDGEEEIVECCFSGSYILYAKEVDFIPLANMCPKPITGNFFGYSLGERLVPLQEYATAIRRAEMSFAMQSSTPRIGVNPEFLDAEEIQRGVSAMFILDRKFDPTKHIFEFQPMQGNLAYVESAMNRFESDKMAMIGMTSPSDTLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYITWKTLIQYSDDFNIQQLAATCLKGQEFLDAKSIENFEFIDRRMINIDLALGFLSEENRLTRQQMILQAQQQFAQAMMMIPQEVPEMFIKVRRPFEDTLRVLGVKDVDAYLPTMEEAVKIMQAQAAKGPSAEQQETQSKVALNNAKVQESGSVTALNIKKAEDIDTDNMFEALAAKRGKLSAVEID
Ga0209088_1000023534	F001059	AGGA	MATYDIDSLKADLPTAKELAQFVYDKVNVSLDLVGKNKEEQYTVAKNALEGKKIPSEYLTEENPYVDKKDQIPADPVKKLPKRDIDLPDEDSLVHFFGATNMPHPLDPQSDKKVHINFKKYNNGVLTYQIMGPLEQIPFGTKVNKYGQTIPEKYTWLDPRTPELVMRRADGTLTEKGRGLYTFLVGEKGGGVWSLIDRDIVSISAKNIADPWA
Ga0209088_1000023535	F103134	GAGG	MYGRVINGGAQMRKGVTKGINDKLTAHAGEDSRREVIAGAVRKAFTVRNLSDQTTNNSNKGKFKTPSVPSKV
Ga0209088_1000023538	F098944	AGG	MFEEIRPEGSTVTSEELKKKARDYAKAKRAQKKAMKLATGQIEPKAIETVPVVDEFDMTAFVPRSQVKAGRPKSIVNKVTEYGALFNKLNDERTSRGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISVEHIQNVTREDEGDAEDALNEFMESLRKV
Ga0209088_1000023539	F001915	AGGA	MEWTLAHPLHDVDDIVDMADSVFGHEADGILTRDRAVFRKHVTVATTVQLFDKSKEFIAVCRGPKIIDTFLGQAEVNDALLGYCWFDRGGYTTYANEEISNAKFHHVDLELSPRLRVRLINEMIDQHILWASQWYIPVVCSTSIRAEHDGFMKIHKKRGFSVNGSYAWIRTEKGLECLKK
Ga0209088_100002354	F000166	N/A	MQNIPSPDDAKLFAQSVRKWQQVLSLGDWRIEKGSKPAKSAMASVEFTPAARLAVYRLGDFGAEKITPDSLDRTALHELLHIFLYDLLCVTADRQASDEDKEMQEHRIINTLEHLLSKDSHGID
Ga0209088_1000023541	F019121	AGG	MAYTLKRSITGLSFEDIKRIYDNNPNMTLRELSNLTGYAIPFLKNLLLDK
Ga0209088_100002358	F002933	N/A	MVQPEGYPNRTDALERRAERLQEEYAQALKMRKVKDKIDDLEFQLYVKKAERNQLSLEIFTNRKLDIFV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209088_10000235

Overview

Ecosystem & Geography

Associated Families

Sequences